Modern Statistics for Modern Biology sections on reporting and ISLP
Modern Statistics for Modern Biology sections on reporting and ISLP ch. 5.2 (bootstrap) re-read (40 min); apply bootstrap intervals across both papers
In: LABLOOP-W19 Notebook
455 CARDS · 41 WEEKS · EVERY SOURCE THE PLAN NAMES
Every video, chapter, paper and repository in the programme, as one card each, with the time it costs and why it is there. Filter by how long you have.
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Modern Statistics for Modern Biology sections on reporting and ISLP ch. 5.2 (bootstrap) re-read (40 min); apply bootstrap intervals across both papers
In: LABLOOP-W19 Notebook
Saturday sandbox
Single-cell best practices (Heumos et al., theislab) — sc-best-practices.org, introduction and quality-control chapters
In: LABLOOP-W19 Notebook
Saturday sandbox · after Single-cell best practices
MIT 6.874 single-cell lecture (Kellis, YouTube)
In: LABLOOP-W19 Notebook
Saturday sandbox · after MIT 6.874 single-cell lecture
Cumming (2014), "The new statistics: why and how", Psychological Science 25(1):7-29 — the case for estimation and intervals over p-values
In: LABLOOP-W19 Notebook
Saturday sandbox · after Cumming (2014), "The new statistics: why and how"
Chip Huyen, ML Interviews Book — huyenchip.com/ml-interviews-book (free) — chapters on the interview process, for the applications you send this week
In: LABLOOP-W19 Notebook
StatQuest "PCA main ideas", "t-SNE, Clearly Explained" and "UMAP Dimension Reduction, Main Ideas!!!" (YouTube, 30 min) — the three plots every single-cell talk shows
In: LABLOOP-W19 Notebook
PBMC 3k tutorial notebook (in the docs; scverse/scanpy-tutorials is archived, ★ 242) in Colab
In: LABLOOP-W19 Notebook
Run the quality-control notebook on the same data; compare cell counts after filtering
In: LABLOOP-W19 Notebook
scipy.stats.bootstrap on your key metrics; replace every naked number in both papers
In: LABLOOP-W19 Notebook