execution-plan/weeks/week-05-fermlit-corpus-and-schema/commitment.md · UPDATED 2026-09-16
Week 05 commitment
3 parts426 words
6 checkboxes — tick them, they save to the file
State: UNCONFIRMED. Owner: Peter Ciancaglini. Specification
Start date: not set. End date: not set. Available hours: confirm (planned ceiling 10).
Primary outcome: fermlit corpus and schema.
Minimum that keeps the next gate alive: RELATED.md. If someone did it already, you must know now.
0101
Deliverables to commit
01
Deliverables to commit
-
related-work.md: Every citation resolves and the novelty statement follows the evidence. -
corpus-protocol.md: Retrieved, eligible, accessible and included counts are separately reported. -
schema-review.md: Schema distinguishes paper, experiment, missing, not reported, and extraction failed. - Bounded learning exercise and personal teach-back.
- Evidence-backed branding and opportunity pack.
- Sunday review and next physical action.
0202
Proposed calendar
02
Proposed calendar
| Day | Minutes | Physical action / outcome | Actual slot | Done |
|---|---|---|---|---|
| Mon | 90 | Verify at least ten related works and decide whether FermLit is a new resource or an extension; record search strings and date. | Not set | [ ] |
| Tue | 90 | Notes; Rosalind problems 1-4 (rosalind.info) | Not set | [ ] |
| Wed | 90 | Pilot the parenthesized Europe PMC query, screen eligibility and acquire up to the 500-paper target with a license-aware manifest. Last ten minutes: optional note. | Not set | [ ] |
| Thu | 90 | LightGBM soft sensor with tuned regularization Include relevant founder-paper work within this block. | Not set | [ ] |
| Fri | 90 | Define experiment-level records and provenance fields; hand-map three papers with multiple conditions; save raw and normalized units. | Not set | [ ] |
| Sat | 90 | Resolve critical spillover; long-form draft if due; sandbox only if done. | Not set | [ ] |
| Sun | 60 | Build log, evidence, gap review, next actions. | Not set | [ ] |
0303
Dependency and capacity check
03
Dependency and capacity check
- Missing essential inputs: not yet inspected.
- Human/external dependency, owner and expected date: not yet inspected.
- Week-specific constraint: Do not equate search hits with fermentation experiments. Scientific Data claims and company gaps are hypotheses. Freeze paper-level development/test partitions before annotation or prompt tuning.
- Existing session authorization for external actions or spending: not assessed; local planning only at scaffold creation.
- Scope to cut first: optional polish/additional examples; preserve scientific validity.
- If the forecast exceeds available time: record a concrete reduced scope or revised delivery proposal before committing.
Peter's commitment / adjustments: pending. Reviewing model and date: pending.