WEEK 01 · A TANK IN 80 LINES
Imagine a restaurant kitchen at 7 pm. The chef (the microbe) is cooking. The pantry (the substrate, sugar) is being emptied. The dishes going out (the product) pile up. The air in the kitchen (dissolved oxygen) gets thinner as more cooks join. At first nothing happens (the cooks arrive and put their aprons on: the lag phase), then orders fly (exponential growth), then the pantry runs low and the pace flattens (stati…
THE NEXT BLOCK
Saturday sandbox · after Good enough practices in scientific computing, Wilson et al., PLoS Computational Biology 2017. T…
Sandve G. et al., "Ten Simple Rules for Reproducible Computational Research", PLOS Comp. Biol. 9(10):e1003285, 2013 — DOI 10.1371/journal.pcbi.1003285. This is week 04's reading; reading it early is allowed, re-reading it in week 04 is still required
In: LABLOOP-W00 Notebook
By Sunday you should be able to say: “I can draw the growth curve, point at each phase, and show the line of code that creates it.”
MOMENTUM
2026-09-29 18:29 Finished: SciPy docs, scipy.integrate.solve_ivp2026-09-29 17:44 Finished: LearnChemE (CU Boulder) · "Monod Cell Growth Example (Bio)"2026-09-28 22:11 Finished: Crash Course Biology #3 · "Biological Molecules2026-09-28 21:50 Finished: OpenStax Biology 2e2026-09-25 11:16 Finished: OpenStax Biology 2e