455 CARDS · 41 WEEKS · EVERY SOURCE THE PLAN NAMES
Every video, chapter, paper and repository in the programme, as one card each, with the time it costs and why it is there. Filter by how long you have.
11 cards shown. Stashes: LABLOOP-W00 Notebook (15) LABLOOP-W01 Notebook (18) LABLOOP-W02 Notebook (15) LABLOOP-W03 Notebook (19) LABLOOP-W04 Notebook (17) LABLOOP-W05 Notebook (16) LABLOOP-W06 Notebook (12) LABLOOP-W07 Notebook (12) LABLOOP-W08 Notebook (15) LABLOOP-W09 Notebook (10) LABLOOP-W10 Notebook (11) LABLOOP-W11 Notebook (12) LABLOOP-W12 Notebook (12) LABLOOP-W13 Notebook (13) LABLOOP-W14 Notebook (12) LABLOOP-W15 Notebook (10) LABLOOP-W16 Notebook (14) LABLOOP-W17 Notebook (13) LABLOOP-W18 Notebook (10) LABLOOP-W19 Notebook (10) LABLOOP-W20 Notebook (10) LABLOOP-W21 Notebook (13) LABLOOP-W22 Notebook (10) LABLOOP-W23 Notebook (9) LABLOOP-W24 Notebook (9) LABLOOP-W25 Notebook (12) LABLOOP-W26 Notebook (11) LABLOOP-W27 Notebook (10) LABLOOP-W28 Notebook (6) LABLOOP-W29 Notebook (7) LABLOOP-W30 Notebook (10) LABLOOP-W31 Notebook (8) LABLOOP-W32 Notebook (5) LABLOOP-W33 Notebook (13) LABLOOP-W34 Notebook (12) LABLOOP-W35 Notebook (10) LABLOOP-W36 Notebook (8) LABLOOP-W37 Notebook (7) LABLOOP-W38 Notebook (6) LABLOOP-W39 Notebook (6) LABLOOP-W40 Notebook (6)
Zhang, Chung & Oldenburg (1999), "A simple statistical parameter for use in evaluation and validation of high throughput screening assays", Journal of Biomolecular Screening 4(2):67-73 (20 min)
In: LABLOOP-W26 Notebook
Tuesday · after Zhang, Chung & Oldenburg
Zwietering et al. (1990), "Modeling of the bacterial growth curve", Applied and Environmental Microbiology 56(6):1875-1881 (30 min)
In: LABLOOP-W26 Notebook
Tuesday · after Zwietering et al. (1990), "Modeling of the bacterial growth curve"
Ritz et al. (2015), "Dose-response analysis using R", PLoS ONE 10(12):e0146021, sections on the 4-parameter log-logistic model (25 min)
In: LABLOOP-W26 Notebook
Saturday sandbox
Sprouffske & Wagner (2016), "Growthcurver: an R package for obtaining interpretable metrics from microbial growth curves", BMC Bioinformatics 17:172
In: LABLOOP-W26 Notebook
Saturday sandbox · after Sprouffske & Wagner
Midani, Collins & Britton (2021), "AMiGA: software for automated analysis of microbial growth assays", mSystems 6:e00508-21 — an open-source Python tool that fits growth curves without assuming their shape (pip install amiga)
In: LABLOOP-W26 Notebook
Saturday sandbox · after Midani, Collins & Britton (2021), "AMiGA: software for automated analysis of microbial growth as…
NCATS Assay Guidance Manual (ncbi.nlm.nih.gov/books/NBK53196), chapters on assay validation and HTS statistics — the industry reference, free
In: LABLOOP-W26 Notebook
Saturday sandbox · after NCATS Assay Guidance Manual
In: LABLOOP-W26 Notebook
Fit logistic and Gompertz to a public growth curve with parameter intervals
In: LABLOOP-W26 Notebook
curve_fit for 4PL; compare with lmfit output
In: LABLOOP-W26 Notebook
Read the README and one vignette to check your Python 4PL reproduces drc on the same data
In: LABLOOP-W26 Notebook
Look at how it estimates growth rate from optical density online; compare with your offline fit
In: LABLOOP-W26 Notebook