455 CARDS · 41 WEEKS · EVERY SOURCE THE PLAN NAMES
Every video, chapter, paper and repository in the programme, as one card each, with the time it costs and why it is there. Filter by how long you have.
9 cards shown. Stashes: LABLOOP-W00 Notebook (15) LABLOOP-W01 Notebook (18) LABLOOP-W02 Notebook (15) LABLOOP-W03 Notebook (19) LABLOOP-W04 Notebook (17) LABLOOP-W05 Notebook (16) LABLOOP-W06 Notebook (12) LABLOOP-W07 Notebook (12) LABLOOP-W08 Notebook (15) LABLOOP-W09 Notebook (10) LABLOOP-W10 Notebook (11) LABLOOP-W11 Notebook (12) LABLOOP-W12 Notebook (12) LABLOOP-W13 Notebook (13) LABLOOP-W14 Notebook (12) LABLOOP-W15 Notebook (10) LABLOOP-W16 Notebook (14) LABLOOP-W17 Notebook (13) LABLOOP-W18 Notebook (10) LABLOOP-W19 Notebook (10) LABLOOP-W20 Notebook (10) LABLOOP-W21 Notebook (13) LABLOOP-W22 Notebook (10) LABLOOP-W23 Notebook (9) LABLOOP-W24 Notebook (9) LABLOOP-W25 Notebook (12) LABLOOP-W26 Notebook (11) LABLOOP-W27 Notebook (10) LABLOOP-W28 Notebook (6) LABLOOP-W29 Notebook (7) LABLOOP-W30 Notebook (10) LABLOOP-W31 Notebook (8) LABLOOP-W32 Notebook (5) LABLOOP-W33 Notebook (13) LABLOOP-W34 Notebook (12) LABLOOP-W35 Notebook (10) LABLOOP-W36 Notebook (8) LABLOOP-W37 Notebook (7) LABLOOP-W38 Notebook (6) LABLOOP-W39 Notebook (6) LABLOOP-W40 Notebook (6)
Partner-recommended reading (ask for it); if none yet, Rothschild & Mancinelli (2001) "Life in extreme environments" (carry over) and the UniProt "Help" pages on EC numbers and taxonomy filters (75 min)
In: LABLOOP-W23 Notebook
Saturday sandbox
UniProt REST API documentation (rest.uniprot.org) and the BRENDA enzyme database (brenda-enzymes.org) for reported temperature optima
In: LABLOOP-W23 Notebook
Saturday sandbox · after UniProt REST API documentation
iBiology talks on extremophiles and enzymes (search; verify)
In: LABLOOP-W23 Notebook
Saturday sandbox · after iBiology talks on extremophiles and enzymes
Crash Course Biology #35 "Old & Odd" (carry over)
In: LABLOOP-W23 Notebook
Khan Academy / Crash Course refresh on protein folding and denaturation ("why heat unfolds proteins") (15 min)
In: LABLOOP-W23 Notebook
Parse UniProt FASTA, compute length and composition features as a sanity baseline next to embeddings
In: LABLOOP-W23 Notebook
Colab: predict the structure of your top 2 candidates; look at them in 3D. Not used as a feature, only to build intuition and a figure
In: LABLOOP-W23 Notebook
Read the README on the AlphaFold Protein Structure Database; check if your candidates already have predicted structures there (no GPU needed)
In: LABLOOP-W23 Notebook
Browse "The Basic Tools of the Deep Life Sciences" tutorial list; one notebook on protein sequences, only if curious (Saturday)
In: LABLOOP-W23 Notebook