Khan Academy · "Fermentation and anaerobic respiration"
Tuesday · B4 · Tuesday, first
Produce: One paragraph in notes/bio/B4.md: "what is a fermentation, really"
In: LABLOOP-W04 Notebook
455 CARDS · 41 WEEKS · EVERY SOURCE THE PLAN NAMES
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GitHub Docs, "Referencing and citing content" and "About CITATION files"; format spec at citatio…
Wednesday build block
This is the literal procedure for Friday's DOI badge. Read it once, follow it exactly
Read exactly: The Zenodo-integration steps and the minimal CITATION.cff fields
Produce: CITATION.cff in the repo root and a rendering DOI badge in the README
In: LABLOOP-W04 Notebook
StatQuest · "Machine Learning Fundamentals: Cross Validation"
Thursday · M4 · Thursday, first
Produce: The sentence "why random k-fold is wrong for batch data" in notes/ml/M4.md
In: LABLOOP-W04 Notebook
Kapoor S. & Narayanan A., "Leakage and the reproducibility crisis in machine-learning-based scie…
Thursday · M4 · after StatQuest · "Machine Learning Fundamentals: Cross Validation"
The single best paper on the exact mistake that would invalidate Paper 2. Cite it in week 08 and week 18
Read exactly: The taxonomy of eight leakage types; identify which one batch-wise CV prevents
Produce: One paragraph in the README's honest "Where it fails" section naming the leakage type you guarded against
In: LABLOOP-W04 Notebook
The Turing Way, chapter on "Version control" and "Research compendia"
Saturday sandbox
Find it ↗
search
In: LABLOOP-W04 Notebook
OpenStax Microbiology, ch. 8 "Microbial Metabolism"
Saturday sandbox · after The Turing Way, chapter on "Version control" and "Research compendia"
OpenStax Microbiology, ch. 8 "Microbial Metabolism", sections 8.1-8.4 — start at 8.1 Energy, Matter, and Enzymes, chapter entry 8-introduction, recap 8-summary — 8.1 through 8.4; pay attention to aerobic vs anaerobic. Moved out of core on 2026-09-29
In: LABLOOP-W04 Notebook
ISLP ch. 5 "Resampling Methods"
Saturday sandbox · after OpenStax Microbiology, ch. 8 "Microbial Metabolism"
ISLP ch. 5 "Resampling Methods" — free PDF at statlearning.com — 5.1 cross-validation and 5.2 bootstrap; then the ch. 5 lab. Moved out of core on 2026-09-29
In: LABLOOP-W04 Notebook
Sandve G. et al., "Ten Simple Rules for Reproducible Computational Research", PLOS Comp. Biol. 9…
Saturday sandbox · after ISLP ch. 5 "Resampling Methods"
Sandve G. et al., "Ten Simple Rules for Reproducible Computational Research", PLOS Comp. Biol. 9(10):e1003285, 2013. DOI 10.1371/journal.pcbi.1003285 — All ten rules, they are one page each. Moved out of core on 2026-09-29
In: LABLOOP-W04 Notebook
StatQuest · "Bootstrapping Main Ideas!!!"
Saturday sandbox · after Sandve G. et al., "Ten Simple Rules for Reproducible Computational Research", PLOS Comp. Biol. 9…
StatQuest · "Bootstrapping Main Ideas!!!" — Channel: youtube.com/@statquest — search the exact title. (verify): no stable video ID confirmed on 2026-09-15. Moved out of core on 2026-09-29
In: LABLOOP-W04 Notebook
The Turing Way — book.the-turing-way.org, chapters on "Version control"
Saturday sandbox · after StatQuest · "Bootstrapping Main Ideas!!!"
The Turing Way — book.the-turing-way.org, chapters on "Version control" and "Research compendia". The grown-up version of what you shipped this week
In: LABLOOP-W04 Notebook
carpentries-lab/good-enough-practices
Saturday sandbox · after The Turing Way — book.the-turing-way.org, chapters on "Version control"
carpentries-lab/good-enough-practices — the hands-on lesson behind week 00's R3
In: LABLOOP-W04 Notebook
Zenodo help
Saturday sandbox · after carpentries-lab/good-enough-practices
Zenodo help — versioning and GitHub integration, if the DOI badge misbehaves
In: LABLOOP-W04 Notebook
JOSS submission guidance
Saturday sandbox · after Zenodo help
JOSS submission guidance — you submit in week 36, not now. Read it once so that today's release history is already the kind reviewers want
In: LABLOOP-W04 Notebook
intro-stat-learning/ISLP_labs
Colab: Ch05-resample-lab.ipynb; then rewrite one cell using GroupKFold with batch as the group
In: LABLOOP-W04 Notebook
scikit-learn/scikit-learn
User guide "Cross-validation: evaluating estimator performance", section on group-wise splitters; run the visualization example "Visualizing cross-validation behavior"
In: LABLOOP-W04 Notebook
google-research/tuning_playbook
Read only the section on evaluation and "incremental tuning"; one page of habits you will reuse in weeks 8 and 17
In: LABLOOP-W04 Notebook
drivendataorg/cookiecutter-data-science
Compare your Makefile with its conventions; add make report FAKE=1
In: LABLOOP-W04 Notebook