LearnChemE (CU Boulder) · "Monod Cell Growth Example (Bio)"
Monday build block · Monday, before coding
Produce: A hand-sketched growth curve taped next to the screen
In: LABLOOP-W01 Notebook
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SciPy docs, scipy.integrate.solve_ivp
Monday build block · after LearnChemE (CU Boulder) · "Monod Cell Growth Example (Bio)"
Replace predator-prey with biomass-substrate and Monday's task is mostly done
Read exactly: The Examples section only, especially the Lotka-Volterra style system
Produce: The working ODE skeleton in batchlens/sim/monod.py
In: LABLOOP-W01 Notebook
OpenStax Biology 2e, 6.5 Enzymes
Tuesday · B1
Enzyme + substrate is literally the shape of the Monod term S/(Ks+S) you code on Monday
Read exactly: Whole section, plus the chapter-6 review questions reachable from Ch. 6 Introduction if time allows
Produce: 5 questions at the end of notes/bio/B1.md; answer them yourself next week
In: LABLOOP-W01 Notebook
eclipse-paho/paho.mqtt.python README
Wednesday build block
Wednesday's telemetry hop, nothing more
Read exactly: "Publish a single message" example
Produce: The publisher in the Wednesday artifact
In: LABLOOP-W01 Notebook
3Blue1Brown · Essence of Linear Algebra
Thursday · M1 · Thursday, first
Produce: notes/ml/M1.md: what a matrix does to a vector; one example redone in NumPy
In: LABLOOP-W01 Notebook
SciPy documentation for scipy.integrate.solve_ivp (the solver you will use); read the "Examples"
Saturday sandbox
SciPy documentation for scipy.integrate.solve_ivp (the solver you will use); read the "Examples" section
Find it ↗
search
In: LABLOOP-W01 Notebook
Pioreactor project docs (pioreactor.com) — see a real, open-source mini bioreactor with optical…
Saturday sandbox · after SciPy documentation for scipy.integrate.solve_ivp (the solver you will use); read the "Examples"
Pioreactor project docs (pioreactor.com) — see a real, open-source mini bioreactor with optical density and temperature sensors; it makes "online variables" tangible
In: LABLOOP-W01 Notebook
OpenStax Biology 2e, ch. 3 "Biological Macromolecules"
Saturday sandbox · after Pioreactor project docs (pioreactor.com) — see a real, open-source mini bioreactor with optical…
OpenStax Biology 2e, ch. 3 "Biological Macromolecules" — 3-introduction, start at 3.1 Synthesis of Biological Macromolecules — 3.1 and the protein section; skim carbohydrates and lipids; finish on Chapter Summary. Moved out of core on 2026-09-29
In: LABLOOP-W01 Notebook
Khan Academy, Energy and enzymes → Activation energy
Saturday sandbox · after OpenStax Biology 2e, ch. 3 "Biological Macromolecules"
Khan Academy, Energy and enzymes → Activation energy (article) — One article + the practice set. Moved out of core on 2026-09-29
In: LABLOOP-W01 Notebook
Crash Course Biology #3 · "Biological Molecules — You Are What You Eat"
Saturday sandbox · after Khan Academy, Energy and enzymes → Activation energy
Crash Course Biology #3 · "Biological Molecules — You Are What You Eat" — youtube.com/watch?v=H8WJ2KENlK0. Moved out of core on 2026-09-29
In: LABLOOP-W01 Notebook
Khan Academy (MCAT) · "Enzymes and activation energy"
Saturday sandbox · after Crash Course Biology #3 · "Biological Molecules — You Are What You Eat"
Khan Academy (MCAT) · "Enzymes and activation energy" — khanacademy.org/…/v/enzymes-and-activation-energy. Moved out of core on 2026-09-29
In: LABLOOP-W01 Notebook
LearnChemE · "Washout Derivation in CSTR Bioreactor (Bio)"
Saturday sandbox · after Khan Academy (MCAT) · "Enzymes and activation energy"
LearnChemE · "Washout Derivation in CSTR Bioreactor (Bio)" — watch?v=L_bzv0bbU4M. The engineer's version of what happens when the feed stops — which is exactly Friday's injected fault
In: LABLOOP-W01 Notebook
MIT OCW 18.06 Linear Algebra
Saturday sandbox · after LearnChemE · "Washout Derivation in CSTR Bioreactor (Bio)"
MIT OCW 18.06 Linear Algebra (Gilbert Strang), lectures 1-3 — ocw.mit.edu/courses/18-06-linear-algebra-spring-2010. Only if 3Blue1Brown leaves you wanting proofs
In: LABLOOP-W01 Notebook
NPTEL Bioreactors
Saturday sandbox · after MIT OCW 18.06 Linear Algebra
NPTEL Bioreactors (Suraishkumar, IIT Madras), lecture 1 — nptel.ac.in/courses/102106053. A preview of week 09. (verify) course numbering
In: LABLOOP-W01 Notebook
jakevdp/PythonDataScienceHandbook
Colab: notebook 02.00-Introduction-to-NumPy and 02.02-The-Basics-Of-NumPy-Arrays; re-do the 3Blue1Brown matrix-on-vector examples in NumPy
In: LABLOOP-W01 Notebook
fastai/numerical-linear-algebra
Colab: lesson 1 notebook; skim, run the first cells. Linear algebra as computation, not proofs
In: LABLOOP-W01 Notebook
scipy/scipy
Copy the solve_ivp Lotka-Volterra example; replace predator-prey with biomass-substrate. This is 70% of your Monday task
In: LABLOOP-W01 Notebook
Pioreactor/pioreactor
Read README and the docs page on growth-rate estimation; no hardware needed. Shows how real online signals look
In: LABLOOP-W01 Notebook