455 CARDS · 41 WEEKS · EVERY SOURCE THE PLAN NAMES
Everything you could study, filtered .
Every video, chapter, paper and repository in the programme, as one card each, with the time it costs and why it is there. Filter by how long you have.
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Biology
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W00 · Cockpit and positioning W01 · A tank in 80 lines W02 · One hundred real batches W03 · Golden batch, with statistics W04 · L1: public and reproducible W05 · FermLit begins: the corpus W06 · The gold set (the most important … W07 · The extraction agent, measured W08 · GATE 8: technical report and L2 W09 · FermLit at scale W10 · Inter-annotator agreement and the… W11 · Dataset engineering and the repor… W12 · Endorsement route opens; hybrid m… W13 · GATE 13: FermLit v0.5 public, Pap… W14 · Write Paper 1 W15 · Review, revise, human read W16 · GATE 16: Paper 1 on bioRxiv (L3) W17 · Paper 2 experiments, complete W18 · Write Paper 2 W19 · Endorsement closed; review; site W20 · GATE 20: Paper 2 on arXiv, endors… W21 · Paper 3 scoped with a partner W22 · Baselines beaten honestly W23 · Extremophile focus W24 · GATE 24: co-authorship agreed W25 · Instrument 2 trialkit (field module) W26 · Instrument 2 (plate module) W27 · Loop Audit offer, built on papers W28 · GATE 28: first Loop Audit sold W29 · Audit delivery 1 W30 · Audit delivery 2; Paper 3 results W31 · Write Paper 3 W32 · GATE 32: Paper 3 preprint (L4 co-… W33 · Instrument 3 labdocs, part 1 W34 · labdocs, part 2 W35 · labdocs, part 3 W36 · GATE 36: journal + JOSS W37 · Pilot delivery or job process W38 · Talk delivered W39 · Fund package W40 · GATE 40: retro and decision
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Stashes: LABLOOP-W00 Notebook (15) LABLOOP-W01 Notebook (18) LABLOOP-W02 Notebook (15) LABLOOP-W03 Notebook (19) LABLOOP-W04 Notebook (17) LABLOOP-W05 Notebook (16) LABLOOP-W06 Notebook (12) LABLOOP-W07 Notebook (12) LABLOOP-W08 Notebook (15) LABLOOP-W09 Notebook (10) LABLOOP-W10 Notebook (11) LABLOOP-W11 Notebook (12) LABLOOP-W12 Notebook (12) LABLOOP-W13 Notebook (13) LABLOOP-W14 Notebook (12) LABLOOP-W15 Notebook (10) LABLOOP-W16 Notebook (14) LABLOOP-W17 Notebook (13) LABLOOP-W18 Notebook (10) LABLOOP-W19 Notebook (10) LABLOOP-W20 Notebook (10) LABLOOP-W21 Notebook (13) LABLOOP-W22 Notebook (10) LABLOOP-W23 Notebook (9) LABLOOP-W24 Notebook (9) LABLOOP-W25 Notebook (12) LABLOOP-W26 Notebook (11) LABLOOP-W27 Notebook (10) LABLOOP-W28 Notebook (6) LABLOOP-W29 Notebook (7) LABLOOP-W30 Notebook (10) LABLOOP-W31 Notebook (8) LABLOOP-W32 Notebook (5) LABLOOP-W33 Notebook (13) LABLOOP-W34 Notebook (12) LABLOOP-W35 Notebook (10) LABLOOP-W36 Notebook (8) LABLOOP-W37 Notebook (7) LABLOOP-W38 Notebook (6) LABLOOP-W39 Notebook (6) LABLOOP-W40 Notebook (6)
1/12
Read
30 min?
W07
Monday
Craft
Zheng et al. (2023), "Judging LLM-as-a-judge with MT-Bench and Chatbot Arena"
Monday build block
· Read it inside Monday's build block
Build-block reading · Zheng et al. (2023), "Judging LLM-as-a-judge with MT-Bench and Chatbot Arena", NeurIPS Datasets & Benchmarks, sections 1-3 (judge biases you must avoid in week 14)
In: LABLOOP-W07 Notebook
2/12
Watch
50 min
W07
Tuesday
Biology
MIT OCW 7.016 lectures on protein structure and enzymes
MIT OCW 7.016 lectures on protein structure and enzymes (ocw.mit.edu/courses/7-016-introductory-biology-fall-2018), ~50 min
In: LABLOOP-W07 Notebook
3/12
Watch
15 min
W07
Tuesday
Biology
Khan Academy "Steady states and the Michaelis Menten equation"
Tuesday
· after MIT OCW 7.016 lectures on protein structure and enzymes
Khan Academy "Steady states and the Michaelis Menten equation" (MCAT section) (15 min)
In: LABLOOP-W07 Notebook
5/12
Run
30 min?
W07
Saturday
Sandbox
optional
Anthropic Claude Cookbooks (github.com/anthropics/claude-cookbooks) — "extracting structured JSON"
Saturday sandbox
Anthropic Claude Cookbooks (github.com/anthropics/claude-cookbooks) — "extracting structured JSON" and "tool use" recipes
In: LABLOOP-W07 Notebook
6/12
Read
30 min?
W07
Saturday
Sandbox
optional
DSPy (Stanford NLP) documentation "Optimizers"
Saturday sandbox
· after Anthropic Claude Cookbooks (github.com/anthropics/claude-cookbooks) — "extracting structured JSON"
DSPy (Stanford NLP) documentation "Optimizers" — how to tune prompts against a metric instead of by feel
In: LABLOOP-W07 Notebook
8/12
Watch
15 min?
W07
Saturday
Sandbox
optional
Ninja Nerd "Enzyme kinetics" lecture
Saturday sandbox
· after Karpathy, "Deep Dive into LLMs like ChatGPT"
Ninja Nerd "Enzyme kinetics" lecture (YouTube) for Michaelis-Menten in depth
In: LABLOOP-W07 Notebook
9/12
Run
30 min
W07
Build
567-labs/instructor
Define your schema as a Pydantic model and let instructor enforce valid JSON from Claude and Ollama; kills 80% of parsing bugs
In: LABLOOP-W07 Notebook
10/12
Run
30 min
W07
Build
google/langextract
Run an example in examples/notebooks with a local Ollama model; compare its grounded spans with your provenance sentences
In: LABLOOP-W07 Notebook
11/12
Run
30 min
W07
Build
stanfordnlp/dspy
Tutorial on "information extraction" in the docs: define a signature, a metric (your F1), and let an optimizer improve the prompt. Only after your manual baseline exists
In: LABLOOP-W07 Notebook
12/12
Run
30 min
W07
Build
lmfit/lmfit-py
Fit Michaelis-Menten to a small public dataset with confidence intervals on Km and Vmax
In: LABLOOP-W07 Notebook