Modern Statistics for Modern Biology ch. 6 "Testing"
Modern Statistics for Modern Biology ch. 6 "Testing" (multiple testing, FDR) (60 min)
In: LABLOOP-W14 Notebook
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Modern Statistics for Modern Biology ch. 6 "Testing" (multiple testing, FDR) (60 min)
In: LABLOOP-W14 Notebook
Tuesday · after Modern Statistics for Modern Biology ch. 6 "Testing"
StatQuest "False Discovery Rates, FDR, clearly explained" and "p-hacking: What it is and how to avoid it!" (YouTube, 20 min)
In: LABLOOP-W14 Notebook
Stanford CS336 lecture on evaluation (cs336.stanford.edu, videos on Stanford Online YouTube) (60 min); your week 7 notes on Zheng et al. 2023 judge biases (15 min)
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Saturday sandbox
Gopen & Swan (1990), "The Science of Scientific Writing", American Scientist 78:550-558. The best 9 pages ever written on why readers get lost
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Saturday sandbox · after Gopen & Swan (1990), "The Science of Scientific Writing"
Whitesides (2004), "Whitesides' Group: Writing a Paper", Advanced Materials 16(15):1375-1377. Outline-first writing from a legendary chemist
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Saturday sandbox · after Whitesides (2004), "Whitesides' Group: Writing a Paper"
Benjamini & Hochberg (1995), "Controlling the false discovery rate", JRSS B 57(1):289-300 (abstract + procedure)
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Saturday sandbox · after Benjamini & Hochberg (1995), "Controlling the false discovery rate"
Scientific Data "Data Descriptor" article guidelines (nature.com/sdata) — preview of the week 36 venue
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Writing · Coursera Writing in the Sciences (Stanford), modules 1-2 (cutting clutter, active voice) — watch at 1.5x during Saturday buffer if needed
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statsmodels.stats.multitest.multipletests with fdr_bh on the journal comparison; report adjusted p-values
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Implement the fuzzy-field judge as a scorer; log judge vs human agreement on 50 pairs
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Read how tasks define metrics and few-shot prompts; borrow the discipline, not the tool
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Point it at your RELATED.md PDFs and ask "which of these papers report inter-annotator agreement?" to double-check your related-work claims (verify every answer by opening the paper)
In: LABLOOP-W14 Notebook