455 CARDS · 41 WEEKS · EVERY SOURCE THE PLAN NAMES
Everything you could study, filtered .
Every video, chapter, paper and repository in the programme, as one card each, with the time it costs and why it is there. Filter by how long you have.
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Biology
AI & stats
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W00 · Cockpit and positioning W01 · A tank in 80 lines W02 · One hundred real batches W03 · Golden batch, with statistics W04 · L1: public and reproducible W05 · FermLit begins: the corpus W06 · The gold set (the most important … W07 · The extraction agent, measured W08 · GATE 8: technical report and L2 W09 · FermLit at scale W10 · Inter-annotator agreement and the… W11 · Dataset engineering and the repor… W12 · Endorsement route opens; hybrid m… W13 · GATE 13: FermLit v0.5 public, Pap… W14 · Write Paper 1 W15 · Review, revise, human read W16 · GATE 16: Paper 1 on bioRxiv (L3) W17 · Paper 2 experiments, complete W18 · Write Paper 2 W19 · Endorsement closed; review; site W20 · GATE 20: Paper 2 on arXiv, endors… W21 · Paper 3 scoped with a partner W22 · Baselines beaten honestly W23 · Extremophile focus W24 · GATE 24: co-authorship agreed W25 · Instrument 2 trialkit (field module) W26 · Instrument 2 (plate module) W27 · Loop Audit offer, built on papers W28 · GATE 28: first Loop Audit sold W29 · Audit delivery 1 W30 · Audit delivery 2; Paper 3 results W31 · Write Paper 3 W32 · GATE 32: Paper 3 preprint (L4 co-… W33 · Instrument 3 labdocs, part 1 W34 · labdocs, part 2 W35 · labdocs, part 3 W36 · GATE 36: journal + JOSS W37 · Pilot delivery or job process W38 · Talk delivered W39 · Fund package W40 · GATE 40: retro and decision
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Stashes: LABLOOP-W00 Notebook (15) LABLOOP-W01 Notebook (18) LABLOOP-W02 Notebook (15) LABLOOP-W03 Notebook (19) LABLOOP-W04 Notebook (17) LABLOOP-W05 Notebook (16) LABLOOP-W06 Notebook (12) LABLOOP-W07 Notebook (12) LABLOOP-W08 Notebook (15) LABLOOP-W09 Notebook (10) LABLOOP-W10 Notebook (11) LABLOOP-W11 Notebook (12) LABLOOP-W12 Notebook (12) LABLOOP-W13 Notebook (13) LABLOOP-W14 Notebook (12) LABLOOP-W15 Notebook (10) LABLOOP-W16 Notebook (14) LABLOOP-W17 Notebook (13) LABLOOP-W18 Notebook (10) LABLOOP-W19 Notebook (10) LABLOOP-W20 Notebook (10) LABLOOP-W21 Notebook (13) LABLOOP-W22 Notebook (10) LABLOOP-W23 Notebook (9) LABLOOP-W24 Notebook (9) LABLOOP-W25 Notebook (12) LABLOOP-W26 Notebook (11) LABLOOP-W27 Notebook (10) LABLOOP-W28 Notebook (6) LABLOOP-W29 Notebook (7) LABLOOP-W30 Notebook (10) LABLOOP-W31 Notebook (8) LABLOOP-W32 Notebook (5) LABLOOP-W33 Notebook (13) LABLOOP-W34 Notebook (12) LABLOOP-W35 Notebook (10) LABLOOP-W36 Notebook (8) LABLOOP-W37 Notebook (7) LABLOOP-W38 Notebook (6) LABLOOP-W39 Notebook (6) LABLOOP-W40 Notebook (6)
1/12
Read
30 min?
W06
Monday
Craft
Datasheets for Datasets: Gebru et al.
Monday build block
· Read it inside Monday's build block
Build-block reading · Datasheets for Datasets: Gebru et al. (2021), Communications of the ACM 64(12):86-92. The questions your guidelines and dataset card must answer
In: LABLOOP-W06 Notebook
3/12
Read
30 min?
W06
Tuesday
Biology
Rosalind problems 5-8
Tuesday
· after OpenStax Microbiology ch. 12.1-12.2 "Modern Applications of Microbial Genetics"
In: LABLOOP-W06 Notebook
5/12
Read
30 min?
W06
Saturday
Sandbox
optional
Artstein & Poesio (2008), "Inter-coder agreement for computational linguistics"
Saturday sandbox
Artstein & Poesio (2008), "Inter-coder agreement for computational linguistics", Computational Linguistics 34(4):555-596, sections 1-2. The bible of annotation agreement
In: LABLOOP-W06 Notebook
6/12
Read
30 min?
W06
Saturday
Sandbox
optional
McHugh (2012), "Interrater reliability: the kappa statistic"
Saturday sandbox
· after Artstein & Poesio (2008), "Inter-coder agreement for computational linguistics"
McHugh (2012), "Interrater reliability: the kappa statistic", Biochemia Medica 22(3):276-282. Short, open, written for biomedical readers
In: LABLOOP-W06 Notebook
7/12
Watch
15 min
W06
Saturday
Sandbox
optional
3Blue1Brown "Bayes theorem, the geometry of changing beliefs"
Saturday sandbox
· after McHugh (2012), "Interrater reliability: the kappa statistic"
3Blue1Brown "Bayes theorem, the geometry of changing beliefs" (YouTube, 15 min)
In: LABLOOP-W06 Notebook
8/12
Run
30 min?
W06
Saturday
Sandbox
optional
STRENDA guidelines (Standards for Reporting Enzymology Data) — search "STRENDA guidelines"
Saturday sandbox
· after 3Blue1Brown "Bayes theorem, the geometry of changing beliefs"
STRENDA guidelines (Standards for Reporting Enzymology Data) — search "STRENDA guidelines" (verify URL). A real "minimum information" standard; it shows what a reporting checklist looks like and will inspire your completeness analysis
In: LABLOOP-W06 Notebook
9/12
Run
30 min
W06
Build
HumanSignal/label-studio
pip install label-studio, create a text-span project with 5 FermLit fields; annotate 2 papers to feel the difference from JSON-by-hand. Use it only if it speeds you up
In: LABLOOP-W06 Notebook
10/12
Run
15 min
W06
Build
doccano/doccano
Lighter alternative for span annotation; compare in 15 minutes, pick one, never revisit
In: LABLOOP-W06 Notebook
11/12
Run
30 min
W06
Build
argilla-io/argilla
Read the "human feedback on LLM outputs" quickstart; you will use this pattern in week 7 to correct agent outputs
In: LABLOOP-W06 Notebook
12/12
Run
30 min
W06
Build
pymc-devs/pymc-resources
Colab: Statistical Rethinking chapter 2 notebook (grid approximation); do the globe-tossing update by hand, then in code
In: LABLOOP-W06 Notebook