455 CARDS · 41 WEEKS · EVERY SOURCE THE PLAN NAMES
Everything you could study, filtered .
Every video, chapter, paper and repository in the programme, as one card each, with the time it costs and why it is there. Filter by how long you have.
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W00 · Cockpit and positioning W01 · A tank in 80 lines W02 · One hundred real batches W03 · Golden batch, with statistics W04 · L1: public and reproducible W05 · FermLit begins: the corpus W06 · The gold set (the most important … W07 · The extraction agent, measured W08 · GATE 8: technical report and L2 W09 · FermLit at scale W10 · Inter-annotator agreement and the… W11 · Dataset engineering and the repor… W12 · Endorsement route opens; hybrid m… W13 · GATE 13: FermLit v0.5 public, Pap… W14 · Write Paper 1 W15 · Review, revise, human read W16 · GATE 16: Paper 1 on bioRxiv (L3) W17 · Paper 2 experiments, complete W18 · Write Paper 2 W19 · Endorsement closed; review; site W20 · GATE 20: Paper 2 on arXiv, endors… W21 · Paper 3 scoped with a partner W22 · Baselines beaten honestly W23 · Extremophile focus W24 · GATE 24: co-authorship agreed W25 · Instrument 2 trialkit (field module) W26 · Instrument 2 (plate module) W27 · Loop Audit offer, built on papers W28 · GATE 28: first Loop Audit sold W29 · Audit delivery 1 W30 · Audit delivery 2; Paper 3 results W31 · Write Paper 3 W32 · GATE 32: Paper 3 preprint (L4 co-… W33 · Instrument 3 labdocs, part 1 W34 · labdocs, part 2 W35 · labdocs, part 3 W36 · GATE 36: journal + JOSS W37 · Pilot delivery or job process W38 · Talk delivered W39 · Fund package W40 · GATE 40: retro and decision
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Stashes: LABLOOP-W00 Notebook (15) LABLOOP-W01 Notebook (18) LABLOOP-W02 Notebook (15) LABLOOP-W03 Notebook (19) LABLOOP-W04 Notebook (17) LABLOOP-W05 Notebook (16) LABLOOP-W06 Notebook (12) LABLOOP-W07 Notebook (12) LABLOOP-W08 Notebook (15) LABLOOP-W09 Notebook (10) LABLOOP-W10 Notebook (11) LABLOOP-W11 Notebook (12) LABLOOP-W12 Notebook (12) LABLOOP-W13 Notebook (13) LABLOOP-W14 Notebook (12) LABLOOP-W15 Notebook (10) LABLOOP-W16 Notebook (14) LABLOOP-W17 Notebook (13) LABLOOP-W18 Notebook (10) LABLOOP-W19 Notebook (10) LABLOOP-W20 Notebook (10) LABLOOP-W21 Notebook (13) LABLOOP-W22 Notebook (10) LABLOOP-W23 Notebook (9) LABLOOP-W24 Notebook (9) LABLOOP-W25 Notebook (12) LABLOOP-W26 Notebook (11) LABLOOP-W27 Notebook (10) LABLOOP-W28 Notebook (6) LABLOOP-W29 Notebook (7) LABLOOP-W30 Notebook (10) LABLOOP-W31 Notebook (8) LABLOOP-W32 Notebook (5) LABLOOP-W33 Notebook (13) LABLOOP-W34 Notebook (12) LABLOOP-W35 Notebook (10) LABLOOP-W36 Notebook (8) LABLOOP-W37 Notebook (7) LABLOOP-W38 Notebook (6) LABLOOP-W39 Notebook (6) LABLOOP-W40 Notebook (6)
2/17
Read
30 min?
W04
Wednesday
Craft
GitHub Docs, "Referencing and citing content" and "About CITATION files"; format spec at citatio…
Wednesday build block
This is the literal procedure for Friday's DOI badge. Read it once, follow it exactly
Read exactly: The Zenodo-integration steps and the minimal CITATION.cff fields
Produce: CITATION.cff in the repo root and a rendering DOI badge in the README
In: LABLOOP-W04 Notebook
4/17
Read
30 min?
W04
Thursday
Craft
Kapoor S. & Narayanan A., "Leakage and the reproducibility crisis in machine-learning-based scie…
Thursday · M4
· after StatQuest · "Machine Learning Fundamentals: Cross Validation"
The single best paper on the exact mistake that would invalidate Paper 2. Cite it in week 08 and week 18
Read exactly: The taxonomy of eight leakage types; identify which one batch-wise CV prevents
Produce: One paragraph in the README's honest "Where it fails" section naming the leakage type you guarded against
In: LABLOOP-W04 Notebook
5/17
Read
30 min?
W04
Saturday
Sandbox
optional
The Turing Way, chapter on "Version control" and "Research compendia"
Saturday sandbox
In: LABLOOP-W04 Notebook
6/17
Read
30 min?
W04
Saturday
Sandbox
optional
OpenStax Microbiology, ch. 8 "Microbial Metabolism"
Saturday sandbox
· after The Turing Way, chapter on "Version control" and "Research compendia"
OpenStax Microbiology, ch. 8 "Microbial Metabolism", sections 8.1-8.4 — start at 8.1 Energy, Matter, and Enzymes, chapter entry 8-introduction, recap 8-summary — 8.1 through 8.4; pay attention to aerobic vs anaerobic. Moved out of core on 2026-09-29
In: LABLOOP-W04 Notebook
7/17
Read
30 min?
W04
Saturday
Sandbox
optional
ISLP ch. 5 "Resampling Methods"
Saturday sandbox
· after OpenStax Microbiology, ch. 8 "Microbial Metabolism"
ISLP ch. 5 "Resampling Methods" — free PDF at statlearning.com — 5.1 cross-validation and 5.2 bootstrap; then the ch. 5 lab. Moved out of core on 2026-09-29
In: LABLOOP-W04 Notebook
8/17
Read
30 min?
W04
Saturday
Sandbox
optional
Sandve G. et al., "Ten Simple Rules for Reproducible Computational Research", PLOS Comp. Biol. 9…
Saturday sandbox
· after ISLP ch. 5 "Resampling Methods"
Sandve G. et al., "Ten Simple Rules for Reproducible Computational Research", PLOS Comp. Biol. 9(10):e1003285, 2013. DOI 10.1371/journal.pcbi.1003285 — All ten rules, they are one page each. Moved out of core on 2026-09-29
In: LABLOOP-W04 Notebook
10/17
Read
30 min?
W04
Saturday
Sandbox
optional
The Turing Way — book.the-turing-way.org, chapters on "Version control"
Saturday sandbox
· after StatQuest · "Bootstrapping Main Ideas!!!"
The Turing Way — book.the-turing-way.org, chapters on "Version control" and "Research compendia". The grown-up version of what you shipped this week
In: LABLOOP-W04 Notebook
13/17
Read
30 min?
W04
Saturday
Sandbox
optional
JOSS submission guidance
Saturday sandbox
· after Zenodo help
JOSS submission guidance — you submit in week 36, not now. Read it once so that today's release history is already the kind reviewers want
In: LABLOOP-W04 Notebook