execution-plan/weeks/week-21-protein-study-and-partner-scope/commitment.md · UPDATED 2026-09-16

Week 21 commitment

3 parts443 words 6 checkboxes — tick them, they save to the file

State: UNCONFIRMED. Owner: Peter Ciancaglini. Specification

Start date: not set. End date: not set. Available hours: confirm (planned ceiling 10). Primary outcome: protein study and partner scope. Minimum that keeps the next gate alive: Write paper-3-protocol.md with one testable target, one dataset/split and a concrete partner-call request; run one verified baseline if data are ready.

Deliverables to commit

paper-3-protocol.md: Write paper-3-protocol.md with one testable target, one dataset/split and a concrete partner-call request; run one verified baseline if data are ready.
embedding-manifest.csv: Actual memory/runtime fit is measured before a full run; failed sequences are retained.
protein-baselines.csv: A baseline table and concrete request for scientific input exist.
Bounded learning exercise and personal teach-back.
Evidence-backed branding and opportunity pack.
Sunday review and next physical action.

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Proposed calendar

Day	Minutes	Physical action / outcome	Actual slot	Done
Mon	90	Write Paper 3 question, target quantity, label context, dataset/split choice and available partner capabilities; create the repository plan.	Not set	[ ]
Tue	90	One concise applied note, a worked decision/example and unresolved questions.	Not set	[ ]
Wed	90	Benchmark a small embedding batch, then cache permitted sequences with model/version, pooling, truncation and checksums. Last ten minutes: optional note.	Not set	[ ]
Thu	90	One concise applied note, a worked decision/example and unresolved questions. Include relevant founder-paper work within this block.	Not set	[ ]
Fri	90	Train ridge/GBM/small-MLP baselines on frozen splits and prepare partner call materials.	Not set	[ ]
Sat	90	Resolve critical spillover; long-form draft if due; sandbox only if done.	Not set	[ ]
Sun	60	Build log, evidence, gap review, next actions.	Not set	[ ]

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Dependency and capacity check

Missing essential inputs: not yet inspected.
Human/external dependency, owner and expected date: not yet inspected.
Week-specific constraint: An overnight embedding job is unattended compute, not extra working hours. Thermal proteome measurements are not automatically purified-enzyme stability measurements.
Existing session authorization for external actions or spending: not assessed; local planning only at scaffold creation.
Scope to cut first: optional polish/additional examples; preserve scientific validity.
If the forecast exceeds available time: record a concrete reduced scope or revised delivery proposal before committing.

Peter's commitment / adjustments: pending. Reviewing model and date: pending.

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