execution-plan/weeks/week-10-annotation-agreement-and-analysis/commitment.md · UPDATED 2026-09-16
Week 10 commitment
3 parts409 words
6 checkboxes — tick them, they save to the file
State: UNCONFIRMED. Owner: Peter Ciancaglini. Specification
Start date: not set. End date: not set. Available hours: confirm (planned ceiling 10). Primary outcome: annotation agreement and analysis. Minimum that keeps the next gate alive: kappa.
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Deliverables to commit
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Deliverables to commit
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agreement-report.md: Pre-adjudication labels are retained and agreement is reported by field and support. -
descriptive-analysis.md: Exploratory comparisons are labeled; no causal or cross-product efficacy claims. -
figure-inventory.md: One command regenerates each plot and caption N agrees with the table. - Bounded learning exercise and personal teach-back.
- Evidence-backed branding and opportunity pack.
- Sunday review and next physical action.
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Proposed calendar
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Proposed calendar
| Day | Minutes | Physical action / outcome | Actual slot | Done |
|---|---|---|---|---|
| Mon | 90 | Receive the second human's independent 30-paper annotations, calculate categorical agreement/kappa and numeric tolerance agreement, then adjudicate. | Not set | [ ] |
| Tue | 90 | Yield coefficients computed on IndPenSim | Not set | [ ] |
| Wed | 90 | Analyze titer/product/organism, scale and reporting patterns with denominators and comparable units. Last ten minutes: optional note. | Not set | [ ] |
| Thu | 90 | GP soft sensor with uncertainty bands Include relevant founder-paper work within this block. | Not set | [ ] |
| Fri | 90 | Generate Paper 1 figures 1–4 with frozen data/version and export static versions plus captions. | Not set | [ ] |
| Sat | 90 | Resolve critical spillover; long-form draft if due; sandbox only if done. | Not set | [ ] |
| Sun | 60 | Build log, evidence, gap review, next actions. | Not set | [ ] |
0303
Dependency and capacity check
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Dependency and capacity check
- Missing essential inputs: not yet inspected.
- Human/external dependency, owner and expected date: not yet inspected.
- Week-specific constraint: Kappa is not an agreement statistic for continuous raw measurements without justified categorization. If the second annotator is delayed, agreement stays pending and downstream release limitations must be explicit.
- Existing session authorization for external actions or spending: not assessed; local planning only at scaffold creation.
- Scope to cut first: optional polish/additional examples; preserve scientific validity.
- If the forecast exceeds available time: record a concrete reduced scope or revised delivery proposal before committing.
Peter's commitment / adjustments: pending. Reviewing model and date: pending.