# Week 02 commitment

State: UNCONFIRMED. Owner: Peter Ciancaglini. [Specification](./specs.md)

Start date: not set. End date: not set. Available hours: confirm (planned ceiling 10).
Primary outcome: indpensim data and baseline.
Minimum that keeps the next gate alive: the tidy parquet of IndPenSim.

## Deliverables to commit

- [ ] `data-audit.md`: Batch/time/variable/value data and a reproducible manifest exist; benchmark simulated origin is explicit.
- [ ] `alignment-protocol.md`: Five relevant variables and any use of future information are documented.
- [ ] `pca-baseline.md`: A reproducible scores plot exists even if faulty batches do not separate.
- [ ] Bounded learning exercise and personal teach-back.
- [ ] Evidence-backed branding and opportunity pack.
- [ ] Sunday review and next physical action.

## Proposed calendar

| Day | Minutes | Physical action / outcome | Actual slot | Done |
|---|---:|---|---|---|
| Mon | 90 | Record the authoritative IndPenSim source, access terms, checksums and metadata; implement tidy import and count actual available batches. | Not set | [ ] |
| Tue | 90 | Notes + a drawing of a cell making ATP | Not set | [ ] |
| Wed | 90 | Align and unfold batches with an as-of-time rule, inspect units and missingness, and overlay ten trajectories. Last ten minutes: optional note. | Not set | [ ] |
| Thu | 90 | Notes Include relevant founder-paper work within this block. | Not set | [ ] |
| Fri | 90 | Fit exploratory PCA on training normal batches and render held-out projections with labels from metadata. | Not set | [ ] |
| Sat | 90 | Resolve critical spillover; long-form draft if due; sandbox only if done. | Not set | [ ] |
| Sun | 60 | Build log, evidence, gap review, next actions. | Not set | [ ] |

## Dependency and capacity check

- Missing essential inputs: not yet inspected.
- Human/external dependency, owner and expected date: not yet inspected.
- Week-specific constraint: Do not call these real plant batches or require a visually favorable result. The historical download site may fail; use an author-linked source and preserve provenance.
- Existing session authorization for external actions or spending: not assessed; local planning only at scaffold creation.
- Scope to cut first: optional polish/additional examples; preserve scientific validity.
- If the forecast exceeds available time: record a concrete reduced scope or revised delivery proposal before committing.

Peter's commitment / adjustments: pending.
Reviewing model and date: pending.